sequenceTubeMap
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vgteam
displays multiple genomic sequences in the form of a tube map
Today the demo server went off the network, in a way that looks like https://github.com/systemd/systemd/issues/32045#issuecomment-2575269340 It happened after the OOM killer was invoked and killed a vg process that was...
Hello, I find your tool very useful for visualizing genome graph alignments computed for instance with Cactus and converted to .vg. However, Cactus requires in input a Newick tree and...
 I have seen visualization for my vg.xg file. But now I want to choose the distinct color for me. It seems color legend can not be customized. 
Hello, I am a Master's student at Eindhoven University of Technology and the topic of my thesis is to improve the STM tool to better facilitate the exploration of pangenomes....
This was an idea to make it easier to distinguish separate tracks (with different assigned color palettes) and still visualize the mapq information by making the reads more transparent the...
It looks like we changed the configure tracks button alignment and added the mounted/upload toggle to the track UI since we took the screenshots. It might make sense to re-take...
Hello. I encountered an error. Unexpected token 'I', "Internal S"... is not valid JSON When I only add the .xg file, it can be output. However, adding the .gbwt file...
Dear Authors, The current version of the software requires GLIBC-2.27. I wonder if you have any previous versions available, preferably one that depends on GLIBC-2.25. Your help would be greatly...
Hi all, I am trying to visualize a small pangenome chunk (368 KB). I have a .vg file and .xg file generated as follows: `vg chunk -t 8 -c 1...
Bed files are 0-based, half-open intervals [start, end), but are visualized as closed [start, end] when using custom BED regions. See BED format: [here](https://genome.ucsc.edu/FAQ/FAQformat#format1).
