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Sorry, I got a similar error with Java 15 (openjdk version "15.0.2" 2021-01-19) ``` # A fatal error has been detected by the Java Runtime Environment: # # SIGSEGV (0xb)...

@hbarsnes And here it, seems to be the same problem: ``` /usr/lib/jvm/adoptopenjdk-14-openj9-jre-amd64/bin/java -cp /opt/PeptideShaker-2.0.30/PeptideShaker-2.0.30.jar eu.isas.peptideshaker.cmd.ReportCLI -in ./Non-mod_a_peptide_out.psdb -reports 4 -out_reports ./ WARNING: An illegal reflective access operation has occurred WARNING:...

@hbarsnes No change with -Xmx32G. I will try now with 50GB but have my doubts that is will go through. Did you try writing the file on one of your...

@hbarsnes I am trying it with java 14 on another machine now. As the problem appears with the conda package, can you try to run PeptideShaker via conda. This is...

Update: same failure on another linux machine Odd situation that I don't manage to make it work and you always :-D ``` java -Xmx50G -cp /tmp/PeptideShaker-2.0.30/PeptideShaker-2.0.30.jar eu.isas.peptideshaker.cmd.ReportCLI -in /tmp/test/Non-mod_a_peptide_out.psdb -reports...

@hbarsnes It is definitely this data sets as I successfully extracted quite many other reports. The spectrum files and the fasta are on http://computproteomics.bmb.sdu.dk/tmp/FailedRun.zip Thank you!

@hbarsnes Great that PeptideShaker now also works with Java 16. I also get still the same error.

@hbarsnes Could the problem come from the version of the sqlite-jdbc library? There are much newer ones than version 3.18. And my experience is that java libraries are not really...

@hbarsnes Let's say I am not interested too much in the error. Is there a way to find out whether the output file is actually complete?

This if for #866