Peter Vegh

Results 101 comments of Peter Vegh

Thanks for posting a detailed example. Your code works fine here on Ubuntu, without running the lines with sumatra. A couple of comments on what may cause this issue: from...

That's great to hear, thanks for sharing

Hi thanks, yes I received notification about it. While the examples are about usage of the software functionalities, I agree perhaps there should be one on formatting the output. There...

Thanks for the effort. I merged to `dev` and will form part of the next release.

Thanks, I agree that it would be an interesting feature, which is not implemented currently (I think). A solution would be to include a call to `plot_translation()` in `MultilinePlottableMixin.plot_on_multiple_lines()` after...

Thank you for your interest in DnaFeaturesViewer. I had a look at your GFF file and it indeed contains only one record (which is 3.2M bp long) with 2997 features....

If you have a small GFF file, you can run: ``` from dna_features_viewer import BiopythonTranslator graphic_record = BiopythonTranslator().translate_record("yourfile.gff") ax, _ = graphic_record.plot(figure_width=10, strand_in_label_threshold=7) ``` If you want to plot only...

This problem is a bit complicated and may need refactoring, but redefining the [below function](https://github.com/Edinburgh-Genome-Foundry/DnaFeaturesViewer/blob/1833d9e428713e02cb9c25c1d867d020ad50aec9/dna_features_viewer/GraphicRecord/GraphicRecord.py#L169) before plotting at least connects the boxes until a proper solution is implemented: ```python def...

One quick way is to set the defaults before plotting: ```python import matplotlib as mpl mpl.rc('xtick', labelsize=15) mpl.rc('font', weight='bold') # this, however, changes all text ``` Alternatively, if you save...

Hi, not sure which is the best approach, but the options for changing the font size are 1) using rc parameters as shown above (see matplotlib documentation or this [question](https://stackoverflow.com/questions/3899980/how-to-change-the-font-size-on-a-matplotlib-plot)...