Nina Jeliazkova

Include Solr9 vector search in the benchmark

2

https://solr.apache.org/guide/solr/latest/query-guide/dense-vector-search.html new HNSW implementation in Solr9

book as Jupyter notebook(s) with Groovy kernel

1

- like this simple [demo](https://github.com/ideaconsult/notebooks-ambit/blob/master/cdk/demo.ipynb) - notebooks can be linked similar to linked markdown pages - languages can be mixed in the same notebook

Error using get_abstracts command

1

``` $groovy Komenti get_abstracts -l labels.txt --out abstracts/ [get_abstracts, -l, labels.txt, --out, abstracts/] Caught: groovy.lang.MissingMethodException: No signature of method: java.lang.Boolean.split() is applicable for argument types: (String) values: [,] Possible solutions:...

# Error running `test.py` Running `python test.py synuni` gives the following error ``` Traceback (most recent call last): File "test.py", line 38, in syn_mix.run_test_mix(m=200, n=100, k=50) File "KDEm/test_syn_mix.py", line 102,...

NM_001005 describes both particle size and zeta potential

9

Please check ``` particle size descriptor Describes the particle size. The actual approach to describes it is undefined at this level. zetapotential descriptor Describes the zeta potential of the nanomaterial....

"endpoint measured by assay" statements

6

Is it possible to include statements in the ontology `endpoint X is measured by assay Y` ? If yes, I'll provide a list to include. If it is already in,...

Terms from NANoREG harmonised terminology

1

There are 43 terms and corresponding definitions in Table 3.1 of 2016 document `NANoREG harmonised terminology for environmental health and safety assessment of nanomaterials` https://ec.europa.eu/jrc/en/publication/nanoreg-harmonised-terminology-environmental-health-and-safety-assessment-nanomaterials Would it be possible to...

duplicate entries for EC10 in enm ontology

3

EC10 http://purl.enanomapper.org/onto/ENM_0000051 http://www.bioassayontology.org/bao#BAO_0001263 a general comment - definitions seems to be replaced by the statement ` IRI prefix change from BAO_02000 to BAO_00012 in January 2017` for a number of...

Integration of EXPOSED ontology

9

The primary goal is to - learn the current workflow and tool of enanomapper ontology development and maintenance - learn on the fly by trying to integrate EXPOSED ontology using...