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                                            Victoria Cepeda

one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode

I was having a similar issue with an older version of my university system before and running alias python=python3 fixed it, can you try that to see if the tutorial...

one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode

I have a new version of the code that haven't pushed to Github that will probably solve your issues.

Error when running MetaCompass

Hi, can you share the example2_output/logs/kmermask.log file?

Error when running MetaCompass

Please add the -l 150 parameter. The read length is only required by kmer-mask when performing reference selection. The example where I used these reads skips the reference selection an...

snakemake: error: unrecognized arguments: -T

Please make sure you have the required software versions.