upsm-123

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> Which version of panacus are you using? [Version 0.3.3](https://github.com/marschall-lab/panacus/releases/tag/v0.3.3)

Sometimes,we can see: warning[vg::giraffe]: Refusing to perform too-large rescue alignment of 125 bp against 13062 bp ordered subgraph for read HWI-D00591:121:C6T49ANXX:1:1101:2716:26626 which would use more than 1572864 cells and might...

Hi. I added "-p" option and launched again the job. nohup: ignoring input 开始处理样本: CRR041289 Preparing Indexes Loading Minimizer Index Loading Zipcodes Loading GBZ Loading Distance Index v2 Paging in...

The output file size is not growing at a steady rate. I set -t 12, but after running for a while, the CPU usage suddenly dropped from 1200 to around...

The MC I used is a graph pan-genome constructed from 25 genomes. I ran `chmod -w my_graph.dist`, but the issue persists. The sequences for alignment were downloaded from the internet...

Could it be an issue with the sequencing samples? I tested several samples and found that some ran very quickly with stable output, while others did not perform well. However,...

"if the graph is too tangled in some places, reads that touch those places might take too long to map." If that's really the case, is there anything we can...