Umer

Interproscan creates empty iprscan.xml file

1

Hey, I have been following the annotation steps mentioned at [https://funannotate.readthedocs.io/en/latest/tutorials.html#genome-assembly-and-rna-seq](url). I have completed the following with no error so far 1. Repeatmasking using RepeatMasker/Modeler seprately 2. funannotate Clean (worked...

Next Step after generating assembly.gfa file.

4

Hello. Can anyone help.guide me regarding what to do next after generating the .gfa file. I have a Pacbio dataset and used following commands to generate .gfa file. `minimap2 -x...

Annotate command drops AttributeError: 'SimpleLocation' object has no attribute 'nofuzzy_start' error

3

**Are you using the latest release?** yes. version 1.8.17 **Describe the bug** When tunning funannotate annotate command with required options, it drops in errors within the python library.py file. **AttributeError:...

Execution of Teloclip and input output streams

2

Dear Adam, I hope you are doing well. I just got to know about this tool to find telomers in assembled genomes. I Am trying to run this on one...

Use of Hifi reads for telomere extension

6

Hi, Thank you for such a great tool and enhancements for automated extension. I have question regarding usage of HiFi reads. In minimap2, i am changing the `-ax map-pb` to...