GREP2 icon indicating copy to clipboard operation
GREP2 copied to clipboard

GEO RNA-seq Experiments Processing Pipeline

Results 3 GREP2 issues
Sort by recently updated
recently updated
newest added

I follow the code to download SRA but it error no such directory, how to fix it, thank you? > for(i in 1:length(srr_id)){ + get_srr(srr_id=srr_id[i], destdir=tempdir(), ascp=F, + prefetch_workspace=NULL,ascp_path=NULL) +...

Hi. I think in the file run_fastqc.R this `if(!dir.exists("fastqc"))` should be `if(!dir.exists(paste0(destdir,"/fastqc")))`