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Published 20 hours ago • verified publisher icon uc-bd2k

if statement in run_fastqc.R

Open ivokwee opened this issue 5 years ago • 1 comments

Hi. I think in the file run_fastqc.R this

if(!dir.exists("fastqc"))

should be

if(!dir.exists(paste0(destdir,"/fastqc")))

ivokwee avatar Oct 23 '19 21:10 ivokwee

Hello @ivokwee You are right. Actually, it assumes the working directory is the 'destdir' from previous step. Although, resetting the working directory doesn't hurt and it's fixed now. Thanks.

naimmahi avatar Oct 25 '19 21:10 naimmahi