RNAseq-workflow

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How to do if a species do not have the database?

2

Like this, human have a database and can do "biocLite("org.Hs.eg.db") ", but if a species do not have db form Bioconductor. How should I do ? Thanks.

xukaili

你好，我在 RNAseq-workflow中

2

到Step 3. Removing rRNA Sequences with SortMeRNA 中Run SortMeRNA (~15min) sortmerna \ --ref $sortmernaREF \ --reads results/2_trimmed_output/sample_trimmed.fq \ --aligned results/3_rRNA/aligned/sample_aligned.fq \ --other results/3_rRNA/filtered/sample_filtered.fq \ --fastx \ --log \ -a 4...

peiyu1223

sortmerna \ --ref $sortmernaREF \ --reads results/2_trimmed_output/SRR1374921_trimmed.fq.gz \ --aligned results/3_rRNA/aligned/SRR1374921_aligned.fq.gz \ --other results/3_rRNA/filtered/SRR1374921_filtered.fq.gz \ --fastx \ --log \ -a 4 \ -v when i run abover code. I don't konwn...

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