Tobias Schulze

Job warnings in findChromPeaks()

1

Hi, The call of `xcms::findChromPeaks(rawData, param = param))` in [patRoon](https://github.com/rickhelmus/patRoon/blob/master/R/features-xcms3.R) receives the following warning: 'package:stats' may not be available when loading 2: In serialize(data, node$con) : 'package:stats' may not be...

Please briefly describe your problem and what output you expect. If you have a question, please don't use this form. Instead, ask on or . Hi, I observe a problem...

Naming of filter function

3

Hi Rick, I have another issue. I suggest to rename the filter function of patRoon. The naming interferes with the tidyverse filter function and causes errors, if not called explicitly....

Hi, I got the following messages while running `fviz_ellipses(res.famd, c("foo", "bar"), repel = TRUE)`: `gather_()` was deprecated in tidyr 1.2.0. Please use `gather()` instead. The deprecated feature was likely used...

Handling of non numeric requests in API

3

Hi Gert, Unfortunately, I had a curious situation in the last days. Due to an incorrect declaration, I did sent tables of TRUE values and not the mz and intensity...

Implement a JSON representation of MassBank records

7

@hunter-moseley suggested to implement a JSON representation for the records to enhance machine readibility and to account for some future transitions.

Details see https://github.com/MassBank/RMassBank/wiki/RMassBank-Workshop-on-29-August-2023-by-NORMAN-Association-%E2%80%90-community-notes

Hi, I got the following email: > Why are there are a number of MS records in MassBank with chemical names and no structures, yet they have Formulas? Were Elemental...

Webhook

6

The people from Mona asked for a web-hook some while ago. We should add it for easier announcement of changes in the records.

Usage of some tags is still unclear. Do a comprehensive check to have some statistics and more insight.