Job warnings in findChromPeaks()

[tsufz]

Hi, The call of xcms::findChromPeaks(rawData, param = param)) in patRoon receives the following warning:

'package:stats' may not be available when loading 2: In serialize(data, node$con) : 'package:stats' may not be available when loading 3: In serialize(data, node$con) : 'package:stats' may not be available when loading 4: In serialize(data, node$con) : 'package:stats' may not be available when loading 5: In serialize(data, node$con) : 'package:stats' may not be available when loading 6: In serialize(data, node$con) : 'package:stats' may not be available when loading 7: In serialize(data, node$con) : 'package:stats' may not be available when loading

I guess, package:stats was not loaded while calling package:parallel?

The call in patRoon is: findFeatures(anaInfo, "xcms3", verbose = TRUE, param = xset).

Best, Tobias

[jorainer]

In general I think you can safely ignore these warnings - package stats should always be available. Maybe it helps if you update xcms and all other packages (on a ~ recent R version >= 4 with BiocManager::install("xcms")).