Thomas Sicheritz-Pontén

dist: with lot of data binary output "-b" crashes but csv output "-T" does not

6

When running dashing dist with 400,000 genomes the program succeeds when asking for csv "-T" output, but crashes when asking for binary "-b" output. Both commands succeed without problem when...

reading binary output from cmp

2

Is there a way of reading the binary distance matrix from "dashing cmp -b" directly into numpy?

Differences in mash distances between dashing2 vs dashing1/mash

3

I am puzzled about the (for us) large _dashing1/dashing2_ differences for mash distances for some genome pairs. In the example below with _dashing1_ and _mash_ we get values around 0.25...

Google Analytics?

1

Has anyone successfully used Google Analytics tag inside script server pages? /T

Save positions for reproducibility?

6

Is it possible to save or dump the node positions once they have been drawn and physics is turned off? It would be great to be able to store each...

Selecting multiple nodes for further analysis?

1

Is there a way to to select several nodes in a graph (e.g. by shift-clicking) and then apply a python function to the list of nodes?