tutorials
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tskit-dev
A set of tutorials for msprime and tskit.
Seems like an obvious link and source of extra useful methods etc. See https://github.com/tskit-dev/tutorials/issues/141 for background: we should link to that tutorial when it's done.
We have a fully functional short tskit & R tutorial. I wonder if it's worth having a part of the tutorials book on other languages and include a (short) C...
@hyanwong has made an excellent suggestion to create a tutorial about doing genotype imputation using ``tsinfer``. I'll get to it once my pipeline is smoothened.
Chatting to @molpopgen, he says: > When there are sufficient numbers of ancient samples, doing anything with trees is terribly inefficient, and you can recover literally orders of magnitude by...
Now that the basic example will be in the main tskit docs, change the traversal examples a little in `/analysing_trees.html` and add the example of 4 ways of calculating branch...
I love the [GitHub workflow](https://stdpopsim.readthedocs.io/en/latest/development.html#github-workflow) docs in stdpopsim. I refer to it ALL THE TIME. Can we either reference to it in the msprime dev docs or copy it over...
Simplify is a swiss-army knife operation - we should give a tutorial that explains how it works at a high-level and goes through some of the things you can do...
See https://github.com/tskit-dev/tskit/issues/1788
We'll want to have a tutorial for IBD related stuff at some point, so useful to be able to refer to it from tskit's docs. Add a stub here. I...
With some updates coming down the pipeline in tskit (https://github.com/tskit-dev/tskit/projects/9) we should soon be able to resolve the long-standing issue of interoperating with existing phylogenetics methods. It would be really...