Taylor Salo

I think it's just a matter of having something like `dset.annotations = df` in the examples, but if folks want to _add to_ their annotations, rather than replace them, it...

That matches what I remember. The tags were an attempt to address #1436, although actually using the tags to render things in the spec was pushed to #1529.

I think the bug must be buried in `CuBIDS.get_param_groups_dataframes()`, but I'm having trouble figuring out what exactly is happening in that method.

In QSIPrep, we're planning to add a `--report-output-level` parameter that accepts a value of `root`, `subject`, or `session`, with the default being `root`. See https://github.com/PennLINC/qsiprep/issues/848.

Here's my plan for the behavior: ## Move a file ``` cubids mv infile outfile ``` This renames the file and associated files, like a regular rename in `cubids apply`....

A few key points on this: 1. We wouldn't use an IOGenerator or load files based on the tedana directory. This would allow users to pass in specific mixing matrices...

I have AP and PA MESE scans in a current study, but I don't know why. I don't know if there's a use-case as much as it is something researchers...

Apparently we plan to use the AP and PA MESE scans for distortion correction.

Okay, I've limited my change to the MESE and MEGRE suffixes. I don't have any multi-PED MEGRE data, but I figured it was easier to just add direction to that...

It makes sense to me to output variance matrices. xDF has an MIT license, so it should be compatible with the Nilearn BSD-3 license. I don't know the requirements offhand,...