Taylor Salo
Taylor Salo
Found another case, where bval and bvec files are grabbed based on the DWI filename. I'm not sure where in the code this happens (other than that it's in the...
@Remi-Gau, I _think_ this is waiting on #3203, but I could be misremembering.
@Remi-Gau thanks for taking over. Sorry I didn't get around to it back in September.
>@tsalo do you remember what specifically was still needed? @Remi-Gau I thought the only issue was that `compute_fixed_effects` wasn't producing correct results for F contrasts, so the two figures being...
Thanks @effigies! Does that mean the behavior I was seeing was expected? Or is it a bug that is easier to circumvent than fix? In any case, I'll try out...
Happy to! I've noticed that a lot of the advanced examples have been offloaded to https://github.com/miykael/nipype_tutorial. Should the notebook go there, or in the nipype docs?
I opened https://github.com/niflows/nipype1-examples/pull/7, but can move it to this repo if necessary.
The quick start tutorial page actually does have most of what we need. Maybe it could go into some more detail about the actual settings.
I like the idea of region-filling using the T2* and S0 estimates. EDIT: What about [`scipy.interpolate.NearestNDInterpolator`](https://docs.scipy.org/doc/scipy/reference/generated/scipy.interpolate.NearestNDInterpolator.html#scipy.interpolate.NearestNDInterpolator)?