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Potential slow use of `std::pow` in libm

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As part of investigating #346 - @devmitch demonstrated how to profile an R session using AMDuProf on machines running AMD CPUs. Notably, 40% of the `run_plant_benchmarks` takes place in the...

aornugent

`.data` deprecated in tidyselect 1.2.0

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I receive various messages like this when running tests. I plan to address this by removing `.data` and will likely make this change on the `fitness` branch if no-one objects....

aornugent

Variation in environment when growing individuals

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When using feature `grow_indivduals_to_size` we can specify average environmental variables Can we provide a time dependent spline for these? Immediate example being discussed is variable water environments

dfalster

I discovered some unexpected behaviour in `interpolate_to_heights`. When using a coarse grid, individuals in the the largest class are removed, where instead I expected to keep them. It's not quite...

aornugent

Various fixes for Rcmdcheck

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Rcmdcheck complains about lots of issues. For example, see mentions at https://github.com/traitecoevo/plant/actions/runs/3263550975/jobs/5362669197 or rund `rcmdcheck::rcmdcheck()` locally These fixes try to rectify Locally I'm still getting a fail, possibly due to...

dfalster

Missing coarse root biomass in ff16 model

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dfalster

Average light environment negative in certain case

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Hi team! Finding certain cases where average light environment is less than 0, likely due to the interpolator, but unclear to me why this would be. Checking out the `simple_water_use_model`...

itowers1

Change Strategy type from List to R6 object

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Recent changes have motivated a switch in the Strategy type that we expose in R. Currently, RcppR6 generates a Strategy as a simple list object, which is lightweight, but does...

aornugent

Varying HMAT in strategies for lcp function

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If I create 3 strategies varying a particular trait, e.g. LMA, we can see that the lcp varies depending on the values, however there is no change when different HMAT...

Becca-90

Ideas for optimisation in water use model

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Just noting some ideas to optimise speed of water use model: - in ff16w strategy, optimum stem water potential/ci is identified, and the profit is recalculated at this value. Instead,...

itowers1