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When calculating outputs from the size distribution, we will often want to specify the bounds of the integrals. While we can use a trapezoidal integration across the heights specified by...

dfalster

Function to sample from predicted size distribution The size distribution is normalised per unit ground area. This function would give a random sample for number & size of plants in...

dfalster

Expand state variables available in output for FF16

1

This relates to #296 The role of previous plant plus object was to give access to more of the internals. We were reluctant to store all of them for sake...

dfalster

https://github.com/RLesur/klippy Neat idea. Perhaps wait a bit to see if package matures In any case, it's a one line addition.

dfalster

Tidy patch outputs

1

The outputs of `run_scm_collect` are not particularly user friendly. suggest tidying into tidy data format, organising by cohort and species. Here is a prototype ```{r} tidy_species % pull(value) } data_species...

dfalster

Make Patch easier to run without metapopulation structure

3

Needs beginning and end times, and is going to _basically_ be the EBT, but with some of the calculations. Probably resetting the disturbance regime to something that never gets disturbed,...

richfitz

Add functions to extract aggregate properties

12

Want to extract important outcome measures at several levels of organisation so that we can compare to data: - individual plant - all individuals of given species within a patch...

dfalster

Make most vignettes part of regular build and testing

2

These quickly fall into disrepair if they're not run as part of the regular testing. The vignettes are currently in another directory as some are slow to build. It's probably...

dfalster

Canopy Openness Function is Independent of Patch Size

1

The function for calculating canopy openness seems to not have any dependence of patch size, i.e.: E-a(z) = exp(-k_I * f_compute_competition(height)) When patch size != 1 (for stochastic patches) this...

foxeswithdata

We removed PlantPlus object (#159) as it was impeding generalisations about strategy. Now that all that has settled, would be good to make a new version of FF16 that enables...

dfalster