terrance shea

I have also encountered empty "asm.final.fa" files but with no error that I could find. This occurred in two out of three test runs on bacterial hybrid assemblies (Illumina+ONT). The...

Hello- In the event it helps with troubleshooting I can offer a few examples where I ran into this same problem: Aligning reads (2018-10-29 21:18:12) 20,373 / 20,374 (100.0%) Aligning...

Thank you so much for the very quick reply. I ran the latest version, 1.4.11, both with and without the --no-trimming option. The default (without --no-trimming) for 1.4.11 largely matched...

Robert- Thank you for taking this very close look and helping with the specific suggestions. Your responsiveness is very much appreciated.

Is there a recommended version of blasr to use with Falcon-unzip? In our SMRT analysis package we have blasr 1.3.1.142244 but when running a Falcon-unzip command it reports "ERROR: -noSplitSubreads...