Thom Quinn

Thanks Dan! I'm glad you've found the package helpful. I made it exactly for that purpose! This is a very interesting discovery, and I'm afraid that I don't have a...

Hello Ryan!, thanks for your challenging inquiry. I'll share my thoughts below... For rho -- The way that I think about the FDR for rho is a *one-sided test* where...

Thanks Tor. I have a few questions... 1) Could you run: `updateF(otus.propd)` and let me know if this reproduces the error? 2) Is map$diag_zone a factor or a character? (I...

I admit I'm a bit stumped without de-bugging the data first hand. Do you feel comfortable sharing the OTU and labels (as separate CSVs) via private message?

posthoc() does do something different than all other functions... it tries to parse the group vector into a set of pairwise contrasts. Something about the NAs must cause this to...

(By the way, when working with `propd`, you can use `updateF` to get exact p-values. This is much, much faster than the `updateCutoffs` approach.)

Thanks suzannejin for sharing! I will leave this thread open in case others have questions about the using the code.

Hey! Thanks for your interest in propr! Hm, my first guess is that you have run out of RAM. Rcpp will try to make an object size n.features * n.features,...

If you have some programming skills, I got a very basic script that divides up the propr analysis into a few chunks, then glues those chunks back together at the...

Hm. `labRcpp` is a very simple function, written in C++ via Rcpp. Perhaps something about C++ not having enough bits for the integer. Interestingly, log(46000, base = 2) is about...