Thom Quinn

Hey, thanks for your interest in propr. This is a tough one. Calculating an exact p-value requires prior knowledge about how data are generated under the null condition. It is...

Yup, that's the idea! In propr, FDR = {# of rho >= cutoff for null condition} / {# of rho >= cutoff for true condition}. If we get FDR=0, that...

Hi Mauricio, Thanks for your interest in propr! rho[">", 0.9] would select pairs with the *value* (not absolute value) of rho > 0.9, and adding these pairs to the @pairs...

I'll try my best to explain this succinctly, but please note that I am still trying to understand it myself! Let's start by looking at the formula: ![screenshot from 2019-02-07...

As for your other question, `updateCutoffs` is only valid for positive values of rho!! Sorry, I will clarify this in the documentation. I'll also ping Ionas Erb to see if...

@talegari Thank you for your interest in peakRAM! Admittedly, anything to do with parallelizing R really pushes the limits of my knowledge. However, I'm happy to give this problem a...

If you call `follow-sync -wait 600`, you will stay under the daily unfollow limit. This should let you keep the script running steadily in the background instead of in bursts...

Hm, I just checked and the install appears to be working on my machine. Could you try installing another package from GitHub to see whether it is an issue with...

Maybe have a look e.g., here -- https://github.com/orgs/community/discussions/140956

G'day Johne, Thanks for using `propr`. Everything you've written makes sense to me, except I am unsure about this one point "Also, the results will be wrt the geometric mean...