whole-slide-imaging topic

List whole-slide-imaging repositories

tifffile

487
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155
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Read and write TIFF files

qupath

981
Stars
266
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QuPath - Bioimage analysis & digital pathology

bioformats

366
Stars
238
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Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Publ...

CLAM

916
Stars
318
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Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

dsmil-wsi

356
Stars
88
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DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image

NCRF

747
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184
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Cancer metastasis detection with neural conditional random field (NCRF)

ASAP

598
Stars
161
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Program for the analysis and visualization of whole-slide images in digital pathology

openslide

383
Stars
213
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C library for reading virtual slide images

caMicroscope

225
Stars
287
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Digital pathology image viewer with support for human/machine generated annotations and markups.

tiatoolbox

348
Stars
72
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Computational Pathology Toolbox developed by TIA Centre, University of Warwick.