ImageJ topic
ImageJ is an open source Java image processing program inspired by NIH Image. It runs on any computer with a Java 1.8 or later virtual machine. Downloadable distributions are available for Windows, Mac OS X and Linux. ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a “batteries-included” distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
tifffile
Read and write TIFF files
qupath
QuPath - Bioimage analysis & digital pathology
imagepy
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
sciview
sciview is a tool for visualization and interaction with ND image and mesh data
MorphoLibJ
Collection of mathematical morphology methods and plugins for ImageJ
Scripts
:microscope::cocktail: Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
ij-ridgedetection
Detect ridges / lines with imagej
awesome-biological-image-analysis
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
imagej.js
ImageJS--Image analysis in the browser with ImageJ
opencv-rolling-ball
Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.