umls topic
MedCAT
Medical Concept Annotation Tool
sytora
A sophisticated smart symptom search engine
QuickUMLS
System for Medical Concept Extraction and Linking
trove
Weakly supervised medical named entity classification
CogStack-SemEHR
Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
MedCATtrainer
A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
medical-ner
:hospital: Clinical NER with UMLS lookup :hospital:
metamaplite
A near real-time named-entity recognizer
CODER
CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]