smith-waterman topic

Golang metrics for calculating string similarity and other string utility functions

adrg

SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)

Martinsos

Collection of sequence alignment algorithms.

lorenzocestaro

C/C++ implementation of the Smith-Waterman algorithm by using SIMD operations (e.g SSE4.1)

eriksjolund

SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnit...

CMU-SAFARI

Needleman-Wunsch and Smith-Waterman algorithms in python

scastlara

This work implements a dynamic programming algorithm for performing local sequence alignment. Through parallelism, it can run 136X times faster than a software running the same algorithm.

jasonlin316

Fuzzy finder algorithms a la Smith-Waterman for Zig.

fjebaker