omop topic

List omop repositories

mimic-omop

122
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47
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Mapping the MIMIC-III database to the OMOP schema

OMOP2OBO

79
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12
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OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

DPM360

19
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4
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Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data

Cohort360

37
Stars
10
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A web application to find patients, build cohorts and visualize health records

jailbreak

18
Stars
2
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We jailbreak your medical records and genomics data. For free.

DrAC

27
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7
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Extracting Patients' information from clinical notes and export them to an OMOP CDM database.

eds-scikit

31
Stars
5
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eds-scikit is a Python library providing tools to process and analyse OMOP data

BlendedICU

23
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6
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OMOP standardization pipeline for ICU databases

Data-Quality-Analysis

24
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6
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The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)