nextstrain topic
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nextstrain repositories
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covariants
316
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113
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Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
ncov
1.4k
Stars
405
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Nextstrain build for novel coronavirus SARS-CoV-2
nextclade
201
Stars
58
Forks
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Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
mpox
42
Stars
19
Forks
Watchers
Nextstrain build for mpox virus
ncov-ingest
35
Stars
20
Forks
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A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
seasonal-flu
44
Stars
24
Forks
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Scripts. config, and snakefiles for seasonal-flu nextstrain builds