global-health topic
xforms-spec
The XForms-derived specification used in the ODK ecosystem. If you are interested in building a tool that is compliant with the forms rendered by ODK tools, this is the place to start. ✨⚒✨
assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
Bio-Tradis
A set of tools to analyse the output from TraDIS analyses
gff3toembl
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
iva
de novo virus assembler of Illumina paired reads
mlst_check
Multilocus sequence typing by blast using the schemes from PubMLST
plasmidtron
Assembling the cause of phenotypes and genotypes from NGS data
saffrontree
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
openlmis-ref-distro
OpenLMIS v3+ Reference Distribution. Last mile health commodity information system.
ITF_Power_BI
Contains functions for pulling publicly-available global COVID-19 case and testing data for analysis and populating a Power BI dashboard. ARCHIVED: See ITF-Dashboard Repository for further development