gillespie-algorithm topic

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

SciML

Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices

SciML

Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology

darrenjw

Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations

augustinas1

Finite State Projection algorithms for chemical reaction networks

SciML

SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit

SciML

Networkx implementation of the SIS epidemic model for large and heterogeneous networks

wcota

DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays

xiaomingfu2013