genotype topic
spark-vcf
Spark VCF data source implementation for Dataframes
Genetic-Trait-Detector
This python script detects known traits in raw human genetic data.
SNPbinner
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
aldy
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
GenNet
Framework for Interpretable Neural Networks
rd-imputation-accuracy
Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correl...
ECOGEMS
Efficient compression and retrieve of genotype data with integer sparse matrices
GenoTools
GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for...