epidemics topic

Simulation, visualization, and inference of individual level infectious disease models with Julia

jangevaare

Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022

covid19-model

An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources

seandavi

Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.

benmaier

distributed pandemics simulator, uses the power of spark to generate huge bulks of contact-tracing data.

MohamedHmini

Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.

metalcorebear

Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.

pennsignals

Source code for the EpiEstim app.

jstockwin

Open-source repository containing examples and documentation for the Cognizant XPRIZE Pandemic Response Challenge

cognizant-ai-labs

Microscopic Markov Chain Approach to model the spreading of COVID-19

jtmatamalas