bioconductor-package topic
List
bioconductor-package repositories
cBioPortalData
30
Stars
12
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Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
lefser
32
Stars
6
Forks
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R implementation of the LEfSe method
basilisk
25
Stars
13
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Clone of the Bioconductor repository for the basilisk package.
batchelor
18
Stars
7
Forks
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Clone of the Bioconductor repository for the batchelor package.
Biostrings
47
Stars
16
Forks
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Efficient manipulation of biological strings
GenomicRanges
41
Stars
17
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Representation and manipulation of genomic intervals
GenomeInfoDb
26
Stars
14
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Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Rsamtools
25
Stars
25
Forks
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Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
SummarizedExperiment
24
Stars
8
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SummarizedExperiment container
GenomicFeatures
24
Stars
12
Forks
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Conveniently import and query gene models