Tim Treis
Tim Treis
Hm, I think the true underlying issue here is that the image is stored as a datatree (multi-scale image) and we're not respecting that when sub-selecting for channels. Will check...
I'll probably create a new issue for the issue you probably identified, that we cannot pick channels out of datatrees robustly. So we might close this afterwards. Could you plot...
@LucaMarconato have we seen a 5th channel popping up before?
Re [PR894 in `SpatialData`](https://github.com/scverse/spatialdata/pull/894): I don't think we need to wait for that here since what he's implementing there is a lot more involved than what we're doing here (allowing...
> It's all lazy anyway until things are written to disk. @LucaMarconato yeah, this is sometimes a bit tricky in downstream applications. I've found that I had to manually save...
Note to self: - Doesn't correctly parse str names of channels `INFO Calculating 'cpmeasure' correlation features between channels '0' and '1'. ` - Should show, for permutations, the total number...
Thank you so much for the triage @LucaMarconato! ❤️
Hey @BaldanMatt, thanks for confirming the suspicion! It's in our current sprint, so it should be fixed with the next release :) cc @Sonja-Stockhaus
@ilan-gold had strong opinions on this in general - and realistically we can probably get away with sth that covers all use cases? Maybe we could automatically do that within...
Superseded by https://github.com/scverse/squidpy/pull/982