Tim Treis
Tim Treis
Hey @mikijoyce, before starting to troubleshoot, could you please update your Squidpy and try again? We're currently on version 1.6.5
Hey @melocery, thank you for PR! However, there's a licensing issue with it, so we can't accept it in this state. Your PR adds a hard dependency on `SpatialLeiden`. While...
> scanpy is also BSD3 but does also depend on leidenalg and igraph which are both GPL licensed. Is this because they are only used in optional dependencies? Yes, exactly...
merged! Thank you for the contribution @niklasmueboe !
> do you think we should add tests here? Yeah, that's a good idea, but don't overinvest. Given that the entire spatial plotting module in Squidpy will be deprecated in...
Can you describe the issue you're solving here better and then also translate this into a test?
Don't fully understand the PR, the code changes seem equivalent? Good to get rid of the dependency for a fairly simple calculation, but still: ``` import numpy as np import...
Hey @ibsafa, sorry about whatever onestardao was writing there, I've deleted it now since it seems like spam. We're in the process of deprecating the ImageContainer in favor of https://spatialdata.scverse.org/en/stable/...
`SpatialData` stores the images as zarr-backed `xarray.DataArray`s, so you can also directly access them there while still getting all the benefits of the other tooling around that - although I'm...
Can be hotfixed with ``` t = get_transformation(sdata["hne"]["scale0"].image) set_transformation(sdata_right["hne_tiles"], t) ```