Tiago Jesus
Tiago Jesus
While using abricate to get resistance genes out of a set of sequences, I have noticed that card entries do not have aro accessions in the report file, instead have...
This PR is a first implementation of the tests for python templates available in flowcraft (related with issue #148 ). The basic idea is to place each test under `flowcraft.tests.template_tests`...
Now that we removed the dependency on the submodule and have the python templates within the repo, maybe we should start thinking in adding unit tests for some of the...
At the moment `--merge_params` argument allow us to merge all the parameters that are repeated through the pipeline, while not providing this option will make a unique parameter for each...
Right now, assemblerflow accepts only paired end read files (fastq), however it would be handy to add support for single fastq files.
Currently `flowcraft build` copies all python template scripts (associated to different modules) when building a new pipeline. However in some cases we don't use all those templates because the modules...
Now if we ran ```bionode-ncbi search assembly someweirdcombinationofcharacters``` this should render no output at all. Maybe it would be nice to have a warning in these cases.
After the creation of the consensus `JSON` file in pATLASflow, as described in [tiagofilipe12/pATLASflow#3](https://github.com/tiagofilipe12/pATLASflow/issues/3), a score can be created from the arithmetic mean of the values of each one of...
Node colapse on given identity, size ratio, shared hashes
One module that we may use is this: https://github.com/wenzhixin/bootstrap-table/tree/master/src/extensions/filter-control