Tiago Jesus

You could provide an example implementation for the upcoming Moz sprint, like you did for instance for bionode-ncbi.

It would help if you have the bionode-ncbi example implementation somehow documented here.

Please provide an example of implementation to follow.

@sjackman the idea would be to have other checks that forbide that string without the `>` operator. We already have some checks for malformed strings, so it is 'just' a...

Does anyone still remember why is this pending? :laughing:

Started playing around with these tests and it will require a little handling on the imports, since the relative path for the imports is different from the templates. Previous import:...

List of templates that have tests: * [ ] assembly_report.py * [ ] downsample_fastq.py * [ ] fasta_spliter.py (this isn't being used as a template but rather executed within the...

Yes, this is the expected behavior from nextflow's `fromFilePairs` channel as @ODiogoSilva said. Because it uses the glob pattern {1,2} to match both pairs with each other. So for example...

Some executions may require further parameters than the ones described in the flowcraft process. For instance bowtie2 has a lot of parameters that aren't available in our current flowcraft processes....

Also a statement like [this](https://github.com/ODiogoSilva/assemblerflow/blob/patlas/assemblerflow/generator/templates/mapping_patlas.nf#L21-L26) can be used in each process template that requires to handle both paired end or single end inputs.