hadge
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theislab
Comprehensive pipeline for donor demultiplexing in single cell
Mainly on the containers: - Conda declarations are great, we can build singulrity/docker images with wave for that or use the mulled containers. - Drop souporcell or add it to...
Dear hadge authors, thanks again for your help in advance! I am running the genetic demultiplexing pipeline for multiple samples, with a sample sheet modelled after the example you provided....
Hi I'm unable to pip install PyVCF (error in PyVCF setup command: use_2to3 is invalid.) Can you let me know which version of PyVCF you are using? Thanks!
Hi again, and thanks for all the help in my long demultiplexing process! Encountered a new error, now at souporcell. I am doing demultiplexing of many samples with reference vcfs....
Hello! I'm trying to run the hadge pipeline (v0.2.0) and am running into issues with the hashing demultiplexing side using conda. Wondering is this part of the pipeline considered stable?...
* Fixed problems with GMM-Demux, Demuxem and other tools because of variables * Fixed problems related to environments not working * Fixed summary - problems due to changes in structure
