cellrank
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theislab
CellRank: dynamics from multi-view single-cell data
**IMPORTANT: Please search among the [Pull requests](../pulls) before creating one.** ## Description Add nicer API for docs. @Marius1311 left some TODOs for you. ## How has this been tested? N/A...
**IMPORTANT: Please search among the [Pull requests](../pulls) before creating one.** ## Description TODOs: - [ ] update docs, get rid of TODOs in the code - [ ] fix existing...
We might have to modify the links a little
... Thanks for the great program! I am using the CytoTRACEKernel to run Cellrank functions in the absence of RNA velocity. Is it possible to construct a GAM from this...
I'm running `g.fit(cluster_key='clusters', n_states=[4, 12])´on a GPCCA estimator object with slepc and petsc installed and running. On verbosity level `cr.settings.verbosity = 2´, there is a **lot** of output: ```pytb Computing...
I'm trying to load a VelocityKernel from an AnnData object that contains a precomputed transition matrix. However, it doesn't led me and gives an incomprehensible error message, which I think...
Hi, When I try to run a dataset with day 4.5 and day 7 cells, cellrank identifies one Initial state in day 4.5 and two terminal states. And the Initial...
Hi, I've solved the issue, but thought it was worth flagging the bug: I just installed cellrank using: ``` conda create -n cellrank python=3.9 conda activate cellrank conda install -c...
Split mean/variance of absorption times from absorption probabilities computation.
This is the example @Marius1311 requested, see also here: https://nbsphinx.readthedocs.io/en/rtd-theme/subdir/gallery.html I'd prefer to use the path in `_images`, since it is more robust than modifying the code cell's metadata and...