Damian

yep, same error too :)

Hi, I have the same problem. How can I change vapply to sapply in `read_phyloseq` function? what do you mean by "devel" version? `pseq2

also I can't import a biom table: python: ``` qiime tools export --input-path otu-table-flt.qza --output-path . Exported otu-table-flt.qza as BIOMV210DirFmt to directory export ``` R: ``` biom.file

Hi @bentsherman, sorry, but it's hard to reproduce as it happens randomly. My code is a simple scatter-gather pipeline: ``` hap_call(BamCh, BedSplits, BamCh.last()) //BamCh.last() = we are sure all bams...

Hey, I finally catched this issue with `--dump-hashes`. However I don't want to post here my full pipeline, I can send you the dumps privately. Let me know how can...

also such example: `chr1 779047 . G A 1000 PASS DP=15;ADF=0,15;ADR=0,0;AD=0,15 GT:DP:ADF:ADR:AD:BSD:BSQ:ALFR 0/1:15:0,15:0,0:0,15:15,0,0,0,0,0,0,42:39,0,0,0,0,0,0,39:0,1 ` Why `GT=0/1`, and `AD=0,15`? Shouldn't it be `1/1`?