thangnx1012 issues

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                                            thangnx1012

TRUTH_VCF

Hi @kishwarshafin, First off, thank you for developing and continuously improving these fantastic tools! I’m working on an ONT (R9.4.1) assembly of a cancer genome (tumor only), following the tutorial...

Call for the TRUTH_VCF file

I am grateful for the tool. I run the ONT data with Tumor only with pepper-DeepVariant, so I don't have the Normal-matched tumor to call the truth-vcf file. Can I...

Error wtih get_merge_fasta

Hi, Great tools. I got stuck at the merge_fasta step, where I used data from your tutorial: https://jiang-junyao.github.io/IReNA/bulk-ATAC+scRNA#integrate-bulk-atac-seq-and-scrna-seq-data-to-reconstruct-regulatory-networks filtered_footprints fastadir merged_fasta ###merge footprints whose distance is less than 4 >...