Error wtih get_merge_fasta

[thangnx1012]

Hi, Great tools.

I got stuck at the merge_fasta step, where I used data from your tutorial: https://jiang-junyao.github.io/IReNA/bulk-ATAC+scRNA#integrate-bulk-atac-seq-and-scrna-seq-data-to-reconstruct-regulatory-networks

filtered_footprints <- read.table(file.path(analysis_dir, "ATAC-seq", 'footprints.bed'),sep = '\t')

fastadir <- file.path(analysis_dir, "Genome") merged_fasta <- get_merged_fasta(filtered_footprints, fastadir) Warning in merge_footprints(footprints, ditance = distance) : NAs introduced by coercion Error in pva1 + pva2 : non-numeric argument to binary operator

###merge footprints whose distance is less than 4 filtered_footprints <- read.table(file.path(analysis_dir, "ATAC-seq", 'footprints.bed'),sep = '\t') fastadir <- file.path(analysis_dir, "Genome/hg38.fa") merged_fasta <- get_merged_fasta(filtered_footprints, fastadir) Error in validInput(fastadir, "fastadir", "direxists") : Input value for 'fastadir' is not a direxists, (fastadir = character) please supply valid input!

Could you help me out with this issue? Thank you!