Raiatea

Hi, I somehow can't seem able to run the violin plot properly. Here is the error I get. snakemake --cores 8 --use-conda --directory ~/Nadia_analysis/dropSeqPipe ..... ..... Activating conda environment:/home/Nadia_analysis/dropSeqPipe/.snakemake/conda/c4d744c4 Attaching...

This is after running the following cmd: sc.pp.log1p(adata) sc.pp.filter_genes_dispersion(adata,n_top_genes=1000) sc.pp.scale(adata,max_value=6) save_dir="paul_result" adata=desc.train(adata, dims=[adata.shape[1],64,32], tol=0.005, n_neighbors=10, batch_size=256, louvain_resolution=[0.8,1.0],# not necessarily a list, you can only set one value, like, louvain_resolution=1.0 save_dir=str(save_dir),...