termithorbor

cannot open URL 'https://api.github.com/repos/fbreitwieser/pavian/tarball/HEAD'

1

Hi, when trying to install the program in R version 4.0.2 I get the following error: remotes::install_github("fbreitwieser/pavian") Downloading GitHub repo fbreitwieser/pavian@HEAD Error in utils::download.file(url, path, method = method, quiet =...

Assign libraries for paired end data in the reademption deseq command

1

Hi, how do I assign the libraries for paired end data in the reademption deseq command? The names of my reads are like this: 1-hour-1A_p1.fq 1-hour-1A_p2.fq 1-hour-2A_p1.fq 1-hour-2A_p2.fq Where p1...

Hi, what are the advantages/disadvantages of using the build_fragments option for paired-end data beside being very time consuming? From my understanding it makes the analysis more precise but to what...

Which normalization from gene_quanti is used for Deseq2?

1

Hi, Which normalization method from the gene_quanti output is used for the Deseq2 analysis? Is there a way to change which normalization approach is used for the Desq2 analysis? Thanks...