termithorbor
termithorbor
Hi, Which --processes makes sense to run with gene_quant. I have given 140 to the job and I can see that for my 24 samples only 24 processes are really...
Is it somehow possible to give more processes to Reademption? because at the moment only 20% of our total CPU capacity is used. Thanks in advance :)
Hi, yes the step is still running since I started it on the 16.04.2024 with the --no_count_split_by_alignment_no --no_count_splitting_by_gene_no option. It is a paired end analysis with two different bacteria species...
Had to change those paths now to https://ftp.ncbi.nlm.nih.gov/pub/taxonomy instead of ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy.
I have the same problem and just answered y I am using the current version of kraken2 installed with conda.