SeqFu

A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to interleave and de-interleave FASTQ files, to rename sequences and to count and print statistics on sequence lengths.

📦 Installation

Seqfu can be easily installed via Miniconda:

conda install -y -c conda-forge -c bioconda "seqfu>1.10"

📰 Citation

Telatin A, Fariselli P, Birolo G. SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files. Bioengineering 2021, 8, 59. doi.org/10.3390/bioengineering8050059

📙 Full documentation

The full documentation is available at: telatin.github.io/seqfu2

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