tbrunetti

Q: custom normalization between samples?

2

**Use case** I have a series of ChIP-seq samples that I eventually want to perform differential peak calling and motif enrichment analysis upon between different treatment groups (and input). **Describe...

Hello, First of all, thank you for publishing a paper on this method because I have felt that the pvalues of scRNA-seq just do not sit well with me and...

Illumina Generated Manifest has no RefStrand column

5

I have no problems running this using BPM, however, when using an Illumina provided manifest (.csv) it is missing the RefStrand header. These are the headers that were provided, can...

Thanks for writing alevin-fry, it has been quite useful for me lately since I am working on a genome that have a lot of sequence homology so I am hoping...