Tavi Nathanson
Tavi Nathanson
We want to ensure that, for example, failed runs of bwa-mem don't produce incomplete BAMs that might end up being processed downstream. I'm not clear if I ran into this...
From @tavinathanson: >confused about the CSV in https://github.com/hammerlab/epidisco/issues/149 vs. the JSON output, and which of those (or both?) we'd want to have for arbitary pipelines? From @smondet: > @ihodes once...
After #423 is done, we can consider using a better aligner that doesn't suffer from the following: > You can use any read mapper to do this step, although we...