Tavi Nathanson

👍 Would love it if `discohorts` didn't need to know/worry about this.

From @tavinathanson: >i'd love a way to e.g. retry any failed root node 3 or 4 times, how hard would that be? so much manual effort now to resubmit 3...

Seconded

@jburos definitely! I suppose my motivating "analysis" to start with was running Epidisco/other pipelines for all samples.

Will also be useful to talk to @julia326 about what types of analyses we could enable here.

@jburos I generally agree with your aside. In lung, I just have `load_cohort(only_rna=True)` and proceed from there. I'm not sure what the downsides are of that?

@jburos fair points. Since we have different use cases, and I want to make sure people don't inadvertently have missing data because they misspelled a BAM filename, how about we...

@jburos I was just worried about confusion with clinical data, since we do allow that to be `NaN`.

Hey @js2dark, Apologies for this being a bit confusing, but you'll actually need to use the versions of `mhctools` and `mhcnames` that `cohorts` now requires vs. upgrading to the latest...

Hey @js2dark, `mhctools` and therefore `cohorts` expects that you have `NetMHC*` tools (e.g. `NetMHCcons`) installed; we can't install those for you for license reasons, but the download page is at:...