tanpham15

Effect of mapping parameters

1

Dear Justin Chu and authors, When I changed the parameters of minimap2 (from asm10 -> asm20) it helped to increase the connection, and it looks similar to result from nucmer...

Prothint - Error: Inflate error

1

Dear authors, I got the error at prothint step. ``` # Thu Mar 21 12:48:30 2024: Calling prothint.py... # Thu Mar 21 12:48:30 2024: starting prothint.py /data/scratch/mpx586/github/gene_predict/ProtHint/bin//prothint.py --threads=2 --geneMarkGtf /data/scratch/mpx586/Batesia_hypochlora/RNA/braker3/braker1/GeneMark-ES/genemark.gtf...

Dear Marcela Uliano-Silva, After running mitohifi (in both v3.2 and 3.2.1), I used final mitogenome with mitos (on https://usegalaxy.eu/) to get annotation in bed. Here is the list parameter I...