CytoTalk
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tanlabcode
A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.
CytoTalk::run_cytotalk(lst_scrna, type_a, type_b) I am encountering an issue with excessive run time when executing CytoTalk in R, despite the minimal data size. Specifically, the lst_scrna variable contains only four cell...
When there are no rows of the counts matrix that are all 0, the line changed would crash.
Nice method. I wanna know how the spatial information is used in CytoTalk. Do you just compute the mutual information between any gene pair in the close cell group? I...
i have 12 cell types i think this algorithm works with two cell types at a time so for 12 cell types i have to run the 66 times so...
Hello! I am trying to am trying to run CytoTalk to find out cell-cell interactions in my data that I obtained using `cellphonedb`. Hence, I have two matrices: one with...
Hi, We are recently trying to install the Cytotalk following the manual. However, we have found that the Cytotalk required R version>4.1.0, but the dependencies PCST is based on python,...
Thank you for this nice tool. I am wondering can cytotalk be used for any other species other than human?
Hello ! Thank you for this wonderful package and thank you for having revised it! :) I just picked up a few mistakes/blurry indications and I wanted to ask your...
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A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better characterization of cell-cell communication.